3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10428

Details:

PFam ID : PF10428

PFam Domain Description : RAM signalling pathway protein

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 78

Average sequence length: 346.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10428	A8PWC6_MALGO_113_503	68.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10428	E7R376_PICAD_4_216	100

Sequence based PCA Plot of the family - PF10428 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=123 Length=8
Motif2 Start=26 Length=11
Motif3 Start=320 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay