3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00333

Details:

PFam ID : PF00333

PFam Domain Description : Ribosomal protein S5, N-terminal domain

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 830

Average sequence length: 66.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00333	A8Q7Y4_BRUMA_146_214	6.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00333	Q3LVZ1_BIGNA_107_173	100

Sequence based PCA Plot of the family - PF00333 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=26 Length=8
Motif2 Start=2 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay