3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07497

Details:

PFam ID : PF07497

PFam Domain Description : Rho termination factor, RNA-binding domain

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 613

Average sequence length: 76.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07497	B9GU04_POPTR_1194_1227	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07497	C0QKE9_DESAH_3_79	100

Sequence based PCA Plot of the family - PF07497 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=30
Motif2 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay