3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00825

Details:

PFam ID : PF00825

PFam Domain Description : Ribonuclease P

Number of Sequence in 50% Dataset : 240

Number of Sequence in Full Dataset : 1194

Average sequence length: 108.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00825	A1VUS7_POLNA_4_100	97.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00825	E6SLZ2_THEM7_3_159	100

Sequence based PCA Plot of the family - PF00825 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=66 Length=8
Motif3 Start=29 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay