3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08032

Details:

PFam ID : PF08032

PFam Domain Description : RNA 2'-O ribose methyltransferase substrate binding

Number of Sequence in 50% Dataset : 407

Number of Sequence in Full Dataset : 1813

Average sequence length: 74.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08032	A1DKC6_NEOFI_403_469	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08032	Q050D5_LEPBL_10_90	99.3

Sequence based PCA Plot of the family - PF08032 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=78 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay