3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00773

Details:

PFam ID : PF00773

PFam Domain Description : RNB domain

Number of Sequence in 50% Dataset : 280

Number of Sequence in Full Dataset : 1873

Average sequence length: 303.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00773	D2VRH1_NAEGR_788_1170	88.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00773	E3QES9_COLGM_519_752	100

Sequence based PCA Plot of the family - PF00773 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=37 Length=8
Motif2 Start=122 Length=8
Motif3 Start=83 Length=14
Motif4 Start=12 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay