3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05993

Details:

PFam ID : PF05993

PFam Domain Description : Reovirus major virion structural protein Mu-1/Mu-1C (M2)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 16

Average sequence length: 525.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05993	B5A1N2_9REOV_1_230	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05993	Q5IW22_9REOV_2_676	100

Sequence based PCA Plot of the family - PF05993 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=1 Length=8
Motif3 Start=12 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay