3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07925

Details:

PFam ID : PF07925

PFam Domain Description : Reovirus RNA-dependent RNA polymerase lambda 3

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 17

Average sequence length: 419.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07925	Q3Y465_REOVL_1_79	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07925	D7EYG3_AGCRV_4_146	87

Sequence based PCA Plot of the family - PF07925 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=337 Length=8
Motif2 Start=311 Length=8
Motif3 Start=409 Length=14
Motif4 Start=273 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay