3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14401

Details:

PFam ID : PF14401

PFam Domain Description : RimK-like ATPgrasp N-terminal domain

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 97

Average sequence length: 154.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14401	Q2RQN4_RHORT_23_180	88.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14401	Q2RQN4_RHORT_23_180	100

Sequence based PCA Plot of the family - PF14401 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=17
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay