3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10347

Details:

PFam ID : PF10347

PFam Domain Description : RNA pol II promoter Fmp27 protein domain

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 105

Average sequence length: 139.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10347	E3L337_PUCGT_1660_1823	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10347	E3L337_PUCGT_1660_1823	100

Sequence based PCA Plot of the family - PF10347 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=55 Length=8
Motif2 Start=73 Length=8
Motif3 Start=1 Length=11
Motif4 Start=97 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay