3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06830

Details:

PFam ID : PF06830

PFam Domain Description : Root cap

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 66

Average sequence length: 54.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06830	Q1HVB0_MESVI_154_212	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06830	Q1HVB0_MESVI_154_212	98.4

Sequence based PCA Plot of the family - PF06830 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay