3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09311

Details:

PFam ID : PF09311

PFam Domain Description : Rabaptin-like protein

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 104

Average sequence length: 155.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09311	A8X939_CAEBR_63_252	37.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09311	Q76P38_DICDI_85_260	95.1

Sequence based PCA Plot of the family - PF09311 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=129 Length=8
Motif3 Start=110 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay