3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13229

Details:

PFam ID : PF13229

PFam Domain Description : Right handed beta helix region

Number of Sequence in 50% Dataset : 1781

Number of Sequence in Full Dataset : 2898

Average sequence length: 171.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13229	E6JRR1_9SPIO_118_208	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13229	D8P997_9BACT_757_919	89

Sequence based PCA Plot of the family - PF13229 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay