3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09382

Details:

PFam ID : PF09382

PFam Domain Description : RQC domain

Number of Sequence in 50% Dataset : 190

Number of Sequence in Full Dataset : 956

Average sequence length: 104.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09382	D8UFW2_VOLCA_461_521	71.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09382	C3YKR1_BRAFL_431_575	100

Sequence based PCA Plot of the family - PF09382 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=70 Length=8
Motif3 Start=28 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay