3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09284

Details:

PFam ID : PF09284

PFam Domain Description : Rhamnogalacturonase B, N-terminal

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 55

Average sequence length: 220.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09284	A8NRT4_COPC7_76_160	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09284	B1ZPN8_OPITP_38_299	100

Sequence based PCA Plot of the family - PF09284 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=87 Length=8
Motif2 Start=233 Length=8
Motif3 Start=195 Length=8
Motif4 Start=151 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay