3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04567

Details:

PFam ID : PF04567

PFam Domain Description : RNA polymerase Rpb2, domain 5

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 1387

Average sequence length: 61.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04567	Q153H5_9TREE_267_344	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04567	C5LSL6_9ALVE_684_737	97.8

Sequence based PCA Plot of the family - PF04567 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=8 Length=20
Motif2 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay