3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00078

Details:

PFam ID : PF00078

PFam Domain Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Number of Sequence in 50% Dataset : 1747

Number of Sequence in Full Dataset : 11191

Average sequence length: 171.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00078	E5T7U1_TRISP_3_139	90.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00078	E5SA17_TRISP_697_822	97.1

Sequence based PCA Plot of the family - PF00078 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=20
Motif2 Start=137 Length=8
Motif3 Start=105 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay