3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13486

Details:

PFam ID : PF13486

PFam Domain Description : Reductive dehalogenase subunit

Number of Sequence in 50% Dataset : 130

Number of Sequence in Full Dataset : 227

Average sequence length: 230.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13486	Q99Q72_DESHA_1_63	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13486	B3XZV3_9BACT_31_198	100

Sequence based PCA Plot of the family - PF13486 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=35 Length=8
Motif3 Start=45 Length=8
Motif4 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay