3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02453

Details:

PFam ID : PF02453

PFam Domain Description : Reticulon

Number of Sequence in 50% Dataset : 115

Number of Sequence in Full Dataset : 423

Average sequence length: 152.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02453	E9C4M5_9EUKA_165_344	92.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02453	B9F8B8_ORYSJ_30_148	100

Sequence based PCA Plot of the family - PF02453 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=21 Length=8
Motif3 Start=12 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay