3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00355

Details:

PFam ID : PF00355

PFam Domain Description : Rieske [2Fe-2S] domain

Number of Sequence in 50% Dataset : 397

Number of Sequence in Full Dataset : 5085

Average sequence length: 94.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00355	A3MXG2_PYRCJ_87_156	99.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00355	Q92YK9_RHIME_131_195	99.9

Sequence based PCA Plot of the family - PF00355 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=43 Length=8
Motif4 Start=108 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay