3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10262

Details:

PFam ID : PF10262

PFam Domain Description : Rdx family

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 375

Average sequence length: 87.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10262	E3KPD6_PUCGT_93_350	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10262	Q9ZQ24_ARATH_98_156	99.1

Sequence based PCA Plot of the family - PF10262 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=38 Length=11
Motif3 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay