3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10489

Details:

PFam ID : PF10489

PFam Domain Description : Ret finger protein-like 3 antisense

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 5

Average sequence length: 61.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10489	A2A280_HUMAN_1_73	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10489	Q6ZPC6_HUMAN_1_124	100

Sequence based PCA Plot of the family - PF10489 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay