3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01158

Details:

PFam ID : PF01158

PFam Domain Description : Ribosomal protein L36e

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 177

Average sequence length: 92.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01158	B7XNJ8_ENTBH_9_69	23.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01158	B5X9C0_SALSA_2_60	99.4

Sequence based PCA Plot of the family - PF01158 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=8
Motif2 Start=7 Length=17
Motif3 Start=44 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay