3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03658

Details:

PFam ID : PF03658

PFam Domain Description : RnfH family Ubiquitin

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 296

Average sequence length: 83.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03658	C4L9I0_TOLAT_1_84	88.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03658	Q4FV25_PSYA2_33_130	100

Sequence based PCA Plot of the family - PF03658 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=64 Length=20
Motif2 Start=23 Length=8
Motif3 Start=3 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay