3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04032

Details:

PFam ID : PF04032

PFam Domain Description : RNAse P Rpr2/Rpp21/SNM1 subunit domain

Number of Sequence in 50% Dataset : 105

Number of Sequence in Full Dataset : 265

Average sequence length: 95.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04032	A7SDD4_NEMVE_10_131	99.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04032	C5GQF5_AJEDR_19_169	100

Sequence based PCA Plot of the family - PF04032 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=92 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay