3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01251

Details:

PFam ID : PF01251

PFam Domain Description : Ribosomal protein S7e

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 196

Average sequence length: 173.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01251	A5B8N7_VITVI_211_275	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01251	D3ZK18_RAT_6_113	100

Sequence based PCA Plot of the family - PF01251 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=34 Length=8
Motif4 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay