3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05407

Details:

PFam ID : PF05407

PFam Domain Description : Rubella virus endopeptidase

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 2

Average sequence length: 83

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05407	B5KDV0_9RHOB_6_88	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05407	POLN_RUBVV_1109_1274	100

Sequence based PCA Plot of the family - PF05407 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay