3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08443

Details:

PFam ID : PF08443

PFam Domain Description : RimK-like ATP-grasp domain

Number of Sequence in 50% Dataset : 181

Number of Sequence in Full Dataset : 904

Average sequence length: 175.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08443	Q69HR1_CIOIN_1_416	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08443	Q9K6S2_BACHD_248_340	100

Sequence based PCA Plot of the family - PF08443 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=92 Length=8
Motif2 Start=170 Length=8
Motif3 Start=14 Length=8
Motif4 Start=184 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay