3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10405

Details:

PFam ID : PF10405

PFam Domain Description : Rad4 beta-hairpin domain 3

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 161

Average sequence length: 74.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10405	E3WW96_ANODA_178_212	22.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10405	Q5CMV5_CRYHO_550_644	100

Sequence based PCA Plot of the family - PF10405 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=39 Length=8
Motif3 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay