3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00163

Details:

PFam ID : PF00163

PFam Domain Description : Ribosomal protein S4/S9 N-terminal domain

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 1647

Average sequence length: 85.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00163	C0AZY3_9ENTR_2_65	21.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00163	D4DRP8_NEIEG_2_52	86

Sequence based PCA Plot of the family - PF00163 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=26 Length=8
Motif2 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay