3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01193

Details:

PFam ID : PF01193

PFam Domain Description : RNA polymerase Rpb3/Rpb11 dimerisation domain

Number of Sequence in 50% Dataset : 174

Number of Sequence in Full Dataset : 1577

Average sequence length: 203.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01193	Q29590_PIG_35_80	72.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01193	RPOA_SCEOB_29_330	97.4

Sequence based PCA Plot of the family - PF01193 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=24
Motif3 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay