3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09126

Details:

PFam ID : PF09126

PFam Domain Description : Restriction endonuclease NaeI

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 24

Average sequence length: 270.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09126	B6BAN2_9RHOB_1_117	10

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09126	D6A7P8_9ACTO_18_337	100

Sequence based PCA Plot of the family - PF09126 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay