3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07727

Details:

PFam ID : PF07727

PFam Domain Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Number of Sequence in 50% Dataset : 408

Number of Sequence in Full Dataset : 3809

Average sequence length: 122.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07727	A9RZD3_PHYPA_1_64	68.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07727	Q2HHK4_CHAGB_926_991	100

Sequence based PCA Plot of the family - PF07727 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=62 Length=8
Motif2 Start=52 Length=8
Motif3 Start=76 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay