3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13806

Details:

PFam ID : PF13806

PFam Domain Description : Rieske-like [2Fe-2S] domain

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 516

Average sequence length: 104.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13806	E3KH53_PUCGT_3_249	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13806	F0WZ24_9STRA_7_133	100

Sequence based PCA Plot of the family - PF13806 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=11
Motif3 Start=36 Length=8
Motif4 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay