3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00910

Details:

PFam ID : PF00910

PFam Domain Description : RNA helicase

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 295

Average sequence length: 96.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00910	E0A3Q6_9VIRU_13_147	91.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00910	Q2HWK3_9VIRU_365_482	92.8

Sequence based PCA Plot of the family - PF00910 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=45 Length=8
Motif3 Start=56 Length=11
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay