3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00366

Details:

PFam ID : PF00366

PFam Domain Description : Ribosomal protein S17

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 1108

Average sequence length: 68.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00366	A7XFT4_BETVU_2_63	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00366	B7P646_IXOSC_12_81	99.9

Sequence based PCA Plot of the family - PF00366 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=5 Length=8
Motif2 Start=26 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay