3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01783

Details:

PFam ID : PF01783

PFam Domain Description : Ribosomal L32p protein family

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 1046

Average sequence length: 54.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01783	B7PBX8_IXOSC_54_101	55

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01783	C3QZ35_9BACE_1_31	97.1

Sequence based PCA Plot of the family - PF01783 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay