3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04563

Details:

PFam ID : PF04563

PFam Domain Description : RNA polymerase beta subunit

Number of Sequence in 50% Dataset : 237

Number of Sequence in Full Dataset : 1958

Average sequence length: 344.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04563	D3BQG9_POLPA_26_105	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04563	A8I790_CHLRE_41_95	98.6

Sequence based PCA Plot of the family - PF04563 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=142 Length=8
Motif2 Start=549 Length=11
Motif3 Start=334 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay