3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00687

Details:

PFam ID : PF00687

PFam Domain Description : Ribosomal protein L1p/L10e family

Number of Sequence in 50% Dataset : 146

Number of Sequence in Full Dataset : 1679

Average sequence length: 210.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00687	F2A020_THEET_1_70	51.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00687	E0Y2J2_9GAMM_1_60	99.5

Sequence based PCA Plot of the family - PF00687 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=73 Length=8
Motif2 Start=49 Length=11
Motif3 Start=35 Length=8
Motif4 Start=64 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay