3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01084

Details:

PFam ID : PF01084

PFam Domain Description : Ribosomal protein S18

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 856

Average sequence length: 53.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01084	Q6C424_YARLI_155_212	42.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01084	Q6C424_YARLI_155_212	99.7

Sequence based PCA Plot of the family - PF01084 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=11
Motif2 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay