3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02218

Details:

PFam ID : PF02218

PFam Domain Description : Repeat in HS1/Cortactin

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 185

Average sequence length: 34.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02218	D7EJV2_TRICA_638_656	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02218	A8Q634_BRUMA_104_120	97.2

Sequence based PCA Plot of the family - PF02218 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay