3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02010

Details:

PFam ID : PF02010

PFam Domain Description : REJ domain

Number of Sequence in 50% Dataset : 250

Number of Sequence in Full Dataset : 494

Average sequence length: 282.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02010	D3BNR2_POLPA_1123_1334	94.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02010	C3ZVD3_BRAFL_287_457	93.9

Sequence based PCA Plot of the family - PF02010 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=247 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay