3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11967

Details:

PFam ID : PF11967

PFam Domain Description : Recombination protein O N terminal

Number of Sequence in 50% Dataset : 158

Number of Sequence in Full Dataset : 1051

Average sequence length: 78.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11967	E1NRL2_9LACO_1_55	45.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11967	C3J948_9PORP_1_85	100

Sequence based PCA Plot of the family - PF11967 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=18
Motif2 Start=1 Length=8
Motif3 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay