3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02759

Details:

PFam ID : PF02759

PFam Domain Description : RUN domain

Number of Sequence in 50% Dataset : 146

Number of Sequence in Full Dataset : 374

Average sequence length: 144.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02759	Q3V3Z6_MOUSE_9_88	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02759	F1SNY8_PIG_30_253	99.1

Sequence based PCA Plot of the family - PF02759 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay