3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00618

Details:

PFam ID : PF00618

PFam Domain Description : RasGEF N-terminal motif

Number of Sequence in 50% Dataset : 200

Number of Sequence in Full Dataset : 706

Average sequence length: 105.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00618	C4R2V8_PICPG_1001_1162	96.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00618	C4R2V8_PICPG_1001_1162	100

Sequence based PCA Plot of the family - PF00618 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=37 Length=8
Motif2 Start=1 Length=21
Motif3 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay