3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11717

Details:

PFam ID : PF11717

PFam Domain Description : RNA binding activity-knot of a chromodomain

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 402

Average sequence length: 58.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11717	B6KVX0_TOXGO_632_673	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11717	Q4YB51_PLABA_77_167	100

Sequence based PCA Plot of the family - PF11717 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=13 Length=8
Motif3 Start=4 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay