3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08914

Details:

PFam ID : PF08914

PFam Domain Description : Rap1 Myb domain

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 75

Average sequence length: 62.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08914	C4QVP3_PICPG_159_217	80.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08914	B0CQL0_LACBS_188_259	100

Sequence based PCA Plot of the family - PF08914 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=8
Motif2 Start=2 Length=18
Motif3 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay