3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06901

Details:

PFam ID : PF06901

PFam Domain Description : RTX iron-regulated protein FrpC

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 4

Average sequence length: 193.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06901	D0XH57_VIBHA_16_446	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06901	F0MJ86_NEIMH_1_257	100

Sequence based PCA Plot of the family - PF06901 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay