3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00830

Details:

PFam ID : PF00830

PFam Domain Description : Ribosomal L28 family

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 907

Average sequence length: 60.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00830	A8HTM8_CHLRE_36_83	5.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00830	D9PMW0_9ZZZZ_3_69	95.8

Sequence based PCA Plot of the family - PF00830 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=31 Length=8
Motif3 Start=55 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay