3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02115

Details:

PFam ID : PF02115

PFam Domain Description : RHO protein GDP dissociation inhibitor

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 213

Average sequence length: 181.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02115	B6IJD6_CAEBR_305_391	78.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02115	A6S8X8_BOTFB_1_95	100

Sequence based PCA Plot of the family - PF02115 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=180 Length=8
Motif2 Start=194 Length=8
Motif3 Start=104 Length=8
Motif4 Start=167 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay